Collaboration In Biology's Century


Todd Sherer, Chief Executive Officer of The Michael J. Fox Foundation for Parkinson’s Research, in Forbes: “he problem is, we all still work in a system that feeds on secrecy and competition. It’s hard enough work just to dream up win/win collaborative structures; getting them off the ground can feel like pushing a boulder up a hill. Yet there is no doubt that the realities of today’s research environment — everything from the accumulation of big data to the ever-shrinking availability of funds — demand new models for collaboration. Call it “collaboration 2.0.”…I share a few recent examples in the hope of increasing the reach of these initiatives, inspiring others like them, and encouraging frank commentary on how they’re working.
Open-Access Data
The successes of collaborations in the traditional sense, coupled with advanced techniques such as genomic sequencing, have yielded masses of data. Consortia of clinical sites around the world are working together to collect and characterize data and biospecimens through standardized methods, leading to ever-larger pools — more like Great Lakes — of data. Study investigators draw their own conclusions, but there is so much more to discover than any individual lab has the bandwidth for….
Crowdsourcing
A great way to grow engagement with resources you’re willing to share? Ask for it. Collaboration 2.0 casts a wide net. We dipped our toe in the crowdsourcing waters earlier this year with our Parkinson’s Data Challenge, which asked anyone interested to download a set of data that had been collected from PD patients and controls using smart phones. …
Cross-Disciplinary Collaboration 2.0
The more we uncover about the interconnectedness and complexity of the human system, the more proof we are gathering that findings and treatments for one disease may provide invaluable insights for others. We’ve seen some really intriguing crosstalk between the Parkinson’s and Alzheimer’s disease research communities recently…
The results should be: More ideas. More discovery. Better health.”
 
 
 

Five myths about big data


Samuel Arbesman, senior scholar at the Ewing Marion Kauffman Foundation and the author of “The Half-Life of Facts” in the Washington Post: “Big data holds the promise of harnessing huge amounts of information to help us better understand the world. But when talking about big data, there’s a tendency to fall into hyperbole. It is what compels contrarians to write such tweets as “Big Data, n.: the belief that any sufficiently large pile of s— contains a pony.” Let’s deflate the hype.
1. “Big data” has a clear definition.
The term “big data” has been in circulation since at least the 1990s, when it is believed to have originated in Silicon Valley. IBM offers a seemingly simple definition: Big data is characterized by the four V’s of volume, variety, velocity and veracity. But the term is thrown around so often, in so many contexts — science, marketing, politics, sports — that its meaning has become vague and ambiguous….
2. Big data is new.
By many accounts, big data exploded onto the scene quite recently. “If wonks were fashionistas, big data would be this season’s hot new color,” a Reuters report quipped last year. In a May 2011 report, the McKinsey Global Institute declared big data “the next frontier for innovation, competition, and productivity.”
It’s true that today we can mine massive amounts of data — textual, social, scientific and otherwise — using complex algorithms and computer power. But big data has been around for a long time. It’s just that exhaustive datasets were more exhausting to compile and study in the days when “computer” meant a person who performed calculations….
3. Big data is revolutionary.
In their new book, “Big Data: A Revolution That Will Transform How We Live, Work, and Think,”Viktor Mayer-Schonberger and Kenneth Cukier compare “the current data deluge” to the transformation brought about by the Gutenberg printing press.
If you want more precise advertising directed toward you, then yes, big data is revolutionary. Generally, though, it’s likely to have a modest and gradual impact on our lives….
4. Bigger data is better.
In science, some admittedly mind-blowing big-data analyses are being done. In business, companies are being told to “embrace big data before your competitors do.” But big data is not automatically better.
Really big datasets can be a mess. Unless researchers and analysts can reduce the number of variables and make the data more manageable, they get quantity without a whole lot of quality. Give me some quality medium data over bad big data any day…
5. Big data means the end of scientific theories.
Chris Anderson argued in a 2008 Wired essay that big data renders the scientific method obsolete: Throw enough data at an advanced machine-learning technique, and all the correlations and relationships will simply jump out. We’ll understand everything.
But you can’t just go fishing for correlations and hope they will explain the world. If you’re not careful, you’ll end up with spurious correlations. Even more important, to contend with the “why” of things, we still need ideas, hypotheses and theories. If you don’t have good questions, your results can be silly and meaningless.
Having more data won’t substitute for thinking hard, recognizing anomalies and exploring deep truths.”

Data is Inert — It’s What You Do With It That Counts


Kevin Merritt, CEO and Founder, Socrata, in NextGov: “In its infancy, the open data movement was mostly about offering catalogs of government data online that concerned citizens and civic activists could download. But now, a wide variety of external stakeholders are using open data to deliver new applications and services. At the same time, governments themselves are harnessing open data to drive better decision-making.
In a relatively short period of time, open data has evolved from serving as fodder for data publishing to fuel for open innovation.
One of the keys to making this transformation truly work, however, is our ability to re-instrument or re-tool underlying business systems and processes so managers can receive open data in consumable forms on a regular, continuous basis in real-time….”

China Law Translate (CLT), a collaborative translation project.


“CLT allows many users to translate small pieces of legal texts between Chinese and English, to promote mutual understanding and provide a resource to legal professionals around the world. The sum of these small pieces, contributed in any order or no order at all, gradually creates a completed translation. You can translate as little or as much as you like, or leave comments to discuss the work of others or suggest better translations.
Quick Start: 1. open a post 2. Select Language you want to translate INTO 3. Open Tranlator Mode. 4. Translate…
We aim to create complete translations of important Chinese laws and articles, but some of the articles you view may still be incomplete or translated less than fluently. Bear with us, we are a new resource and getting there slowly. If you are able,, help us improve the translations you see!”

Innovation Network' Connects Leaders Across Latin America to Share Ideas


National Democratic Institute: “Throughout Latin America, political and civic leaders are under increasing pressure to solve pervasive problems such as poverty, insecurity, corruption and lack of government transparency. Some of that pressure is generated by social media and other new communications tools available to constituents. But new technology is also aiding the response.
Revolutionary developments such as georeferencing and low-cost video conferencing have spawned new ways for political and civic leaders to address some of these problems. Georeferencing, for example, helps combat corruption by making it possible to track the location of individuals, such as government employees, at a given time to ensure they are performing work when and where they say they are.
Leaders are using new technology to push for campaign finance transparency in Colombia, and to improve how political parties in Argentina and Uruguay prepare their members to tackle public policy challenges by using web-based tools for virtual trainings. In Honduras, where it is common for corrupt teachers to claim pay for work in multiple districts, the government is using georeferencing to ensure that these teachers aren’t paid for work they didn’t do.
But despite the innovations, there is little communication among countries in the region, so new methods developed in one country are often unknown in another. To overcome that gap, NDI has supported the creation of Red Innovación (RI), or “Innovation Network,” a virtual online Spanish-language forum where social and political innovators from throughout the region can highlight initiatives, solicit feedback and harvest new ideas to help governments become more responsive, transparent and effective.
Red Innovación uses platforms such as Google Hangout videoconferences to help put political parties and civil society organizations in touch with experts on such topics as how to communicate more effectively, how cyberactivism works and how to use technology to promote transparency.”
 

When Hacking Is Actually a Good Thing: The Civic Hacking Movement


, Founder and CEO, PublicStuff in Huffington Post: “Many people think of the word “hacking” in a pejorative sense, understanding it to mean malicious acts of breaking into secure systems and wreaking havoc with private information. Popular culture likes to propagate a particular image of the hacker: a fringe-type individual with highly specialized technical skills who does what he or she does out of malice and/or greed. And so to many of us the concept of “civic hacking” may seem like an oxymoron, for how can the word “civic,” defined by its associations with municipal government and citizen concerns, be linked to the activity of hacking? Here is where another definition of hacking comes in–one that is more commonly used by denizens of the information technology industries–basically, the process of fixing a problem. As Jake Levitas defined it on the Code for America blog, civic hacking is “people working together quickly and creatively to make their cities better for everyone.” Moreover, as Levitas points out, civic hacking does not necessarily involve computer expertise or specialized technical knowledge; rather, it is a collective effort made up of people who want to make things better for themselves and each other, whether it be an ordinary citizen or a programming prodigy. So how does it work?”

Taxes in the Sharing Economy


http://1099.is/: “Get answers to your tax questions… Earning income using services like Etsy, eBay, Kickstarter, Airbnb, and TaskRabbit has never been easier. In fact, people are even quitting their ‘traditional’ jobs to work solely on these platforms. Unfortunately, understanding the tax implications from this income is difficult. 1099 is here to to try and help you to understand your taxes in the Sharing Economy.”

How to do scientific research without even trying (much)


Ars Technica: “To some extent, scientific research requires expensive or specialized equipment—some work just requires a particle accelerator or a virus containment facility. But plenty of other research has very simple requirements: a decent camera, a bit of patience, or being in the right place at the right time. Since that sort of work is open to anyone, getting the public involved can be a huge win for scientists, who can then obtain much more information than they could have gathered on their own.
A group of Spanish researchers has now written an article that is a mixture of praise for this sort of citizen science, a resource list for people hoping to get involved, and a how-to guide for anyone inspired to join in. The researchers focus on their own area of interest—insects, specifically the hemiptera or “true bugs”—but a lot of what they say applies to other areas of research.

The paper also lists a variety of regional-specific sites that focus on insect identification and tracking, such as ones for the UK, Belgium, and Slovenia. But a dedicated system isn’t required for this sort of resource. In the researchers’ home base on the Iberian Peninsula, insects are tracked via a Flickr group. (If you’re interested in insect research and based in the US, you can also find dozens of projects at the SciStarter site.) We’ve uploaded some of the most amazing images into a gallery that accompanies this article.
ZooKeys, 2013. DOI: 10.3897/zookeys.319.4342

Peers.org


Launch of new site Peers.org: “In many cities around the world, people whose lives have been enriched by the sharing economy were getting together to work out how to find new opportunities to share or overcome barriers. We realized that, with the right tools and support, we could achieve more by working together, across communities, cities, counties and the globe.
We started meeting with small groups of people who share their cars, homes, skills and time to build a grassroots organization, from the ground up. Within a few months, we had meetups and house parties happening in cities across the globe, from Boston to Barcelona and San Francisco to Seoul.
In summer 2013 we launched Peers to provide support and tools for people who want to see the sharing economy thrive. We support the movement in three ways:

  • Mainstream the sharing economy By raising the profile and visibility of sharing
  • Protect the sharing economy Through policy campaigns for smart regulation
  • Grow the sharing economy By discovering, joining and using new peer and sharing services”